Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Minimum sequences

Method

2019-nCoV_N1 (WHO-1) 2019-nCoV_N2 (WHO-2) 2019-nCoV_N3 (WHO-3) E_Sarbeco (WHO-4) RdRP_SARSr (WHO-5) WH-NIC_N (WHO-6) NIID_2019_nCOV_N (WHO-7) JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.177.79 Testing Method: B.1.177.79	1012 Country: 1012	0 / 15 Differences: 0 / 15	Go to details
B.1.1.176 Testing Method: B.1.1.176	983 Country: 983	2 / 15 Differences: 2 / 15	Go to details
B.1.93 Testing Method: B.1.93	978 Country: 978	0 / 15 Differences: 0 / 15	Go to details
B.3 Testing Method: B.3	975 Country: 975	0 / 15 Differences: 0 / 15	Go to details
B.1.177.10 Testing Method: B.1.177.10	964 Country: 964	1 / 14 Differences: 1 / 14	Go to details
B.1.609 Testing Method: B.1.609	947 Country: 947	0 / 15 Differences: 0 / 15	Go to details
B.1.582 Testing Method: B.1.582	939 Country: 939	0 / 15 Differences: 0 / 15	Go to details
B.6.6 Testing Method: B.6.6	937 Country: 937	1 / 15 Differences: 1 / 15	Go to details
B.1.396 Testing Method: B.1.396	927 Country: 927	0 / 15 Differences: 0 / 15	Go to details
C.35 Testing Method: C.35	899 Country: 899	1 / 15 Differences: 1 / 15	Go to details
B.1.1.157 Testing Method: B.1.1.157	894 Country: 894	1 / 15 Differences: 1 / 15	Go to details
C.36 Testing Method: C.36	869 Country: 869	1 / 15 Differences: 1 / 15	Go to details
B.1.588 Testing Method: B.1.588	861 Country: 861	0 / 13 Differences: 0 / 13	Go to details
B.1.177.42 Testing Method: B.1.177.42	850 Country: 850	0 / 15 Differences: 0 / 15	Go to details
B.1.177.6 Testing Method: B.1.177.6	837 Country: 837	0 / 15 Differences: 0 / 15	Go to details
B.1.160.16 Testing Method: B.1.160.16	836 Country: 836	0 / 14 Differences: 0 / 14	Go to details
B.1.428 Testing Method: B.1.428	825 Country: 825	0 / 15 Differences: 0 / 15	Go to details
B.1.349 Testing Method: B.1.349	815 Country: 815	1 / 15 Differences: 1 / 15	Go to details
B.1.1.279 Testing Method: B.1.1.279	810 Country: 810	2 / 15 Differences: 2 / 15	Go to details
B.1.409 Testing Method: B.1.409	806 Country: 806	0 / 15 Differences: 0 / 15	Go to details
B.1.206 Testing Method: B.1.206	803 Country: 803	0 / 15 Differences: 0 / 15	Go to details
B.1.1.63 Testing Method: B.1.1.63	787 Country: 787	1 / 15 Differences: 1 / 15	Go to details
B.6 Testing Method: B.6	785 Country: 785	1 / 15 Differences: 1 / 15	Go to details
B.1.509 Testing Method: B.1.509	777 Country: 777	0 / 15 Differences: 0 / 15	Go to details
B.1.241 Testing Method: B.1.241	772 Country: 772	0 / 15 Differences: 0 / 15	Go to details

Acknowledgements