Detectability of NAAT on SARS-CoV-2 lineages

Lineage

Minimum sequences

Method

2019-nCoV_N1 (WHO-1) 2019-nCoV_N2 (WHO-2) 2019-nCoV_N3 (WHO-3) E_Sarbeco (WHO-4) RdRP_SARSr (WHO-5) WH-NIC_N (WHO-6) NIID_2019_nCOV_N (WHO-7) JRC-S N-Sarbeco China-CDC-ORF1ab China-CDC-N RdRp-nCoV-IP2 RdRp-nCoV-IP4 HKU-ORF1b-nsp14 HKU-N

Has differencies

  Yes No

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Lineage	Times sequenced worldwide	Sequences with differences	Navigate
B.1.1.279 Testing Method: B.1.1.279	1082 Country: 1082	0 / 14 Differences: 0 / 14	Go to details
B.1.1.277 Testing Method: B.1.1.277	1078 Country: 1078	0 / 14 Differences: 0 / 14	Go to details
B.1.1.291 Testing Method: B.1.1.291	1061 Country: 1061	0 / 14 Differences: 0 / 14	Go to details
B.1.1.33 Testing Method: B.1.1.33	1060 Country: 1060	1 / 14 Differences: 1 / 14	Go to details
A.2 Testing Method: A.2	1040 Country: 1040	0 / 15 Differences: 0 / 15	Go to details
B.1.235 Testing Method: B.1.235	1022 Country: 1022	0 / 15 Differences: 0 / 15	Go to details
B.1.1.39 Testing Method: B.1.1.39	991 Country: 991	0 / 14 Differences: 0 / 14	Go to details
B.1.221.3 Testing Method: B.1.221.3	977 Country: 977	0 / 15 Differences: 0 / 15	Go to details
B.1.177.17 Testing Method: B.1.177.17	972 Country: 972	0 / 15 Differences: 0 / 15	Go to details
B.1.128 Testing Method: B.1.128	962 Country: 962	0 / 15 Differences: 0 / 15	Go to details
B.1.93 Testing Method: B.1.93	960 Country: 960	0 / 15 Differences: 0 / 15	Go to details
B.3 Testing Method: B.3	954 Country: 954	0 / 15 Differences: 0 / 15	Go to details
B.1.1.28 Testing Method: B.1.1.28	945 Country: 945	0 / 14 Differences: 0 / 14	Go to details
B.1.526 Testing Method: B.1.526	935 Country: 935	0 / 15 Differences: 0 / 15	Go to details
B.1.389 Testing Method: B.1.389	897 Country: 897	1 / 15 Differences: 1 / 15	Go to details
B.6.6 Testing Method: B.6.6	893 Country: 893	0 / 14 Differences: 0 / 14	Go to details
B.1.177.10 Testing Method: B.1.177.10	853 Country: 853	1 / 14 Differences: 1 / 14	Go to details
B.1.206 Testing Method: B.1.206	846 Country: 846	0 / 15 Differences: 0 / 15	Go to details
A.3 Testing Method: A.3	833 Country: 833	0 / 15 Differences: 0 / 15	Go to details
B.1.177.9 Testing Method: B.1.177.9	830 Country: 830	0 / 15 Differences: 0 / 15	Go to details
B.1.177.6 Testing Method: B.1.177.6	823 Country: 823	0 / 15 Differences: 0 / 15	Go to details
B.1.1.10 Testing Method: B.1.1.10	817 Country: 817	0 / 14 Differences: 0 / 14	Go to details
B.6 Testing Method: B.6	780 Country: 780	0 / 14 Differences: 0 / 14	Go to details
B.1.391 Testing Method: B.1.391	777 Country: 777	0 / 15 Differences: 0 / 15	Go to details
B.1.1.247 Testing Method: B.1.1.247	748 Country: 748	0 / 14 Differences: 0 / 14	Go to details

Acknowledgements