enabled by data from
Amplicon collected by in silico screening of Wales/ALDP-B1D58E/2020 viralgenome, collected on 18/12/2020
Strain
Wales/ALDP-B1D58E/2020
Accession ID
Genome sequenced at
Wales, United Kingdom, Europe
Exposure at
Wales, United Kingdom, Europe
N_Sarbeco
Ref CACATTGGCACCCGCAATCCTGCTAACAATGCTGCAATCGTGCTACAACTTCCTCAAGGAACAACATTGCCAAAAGGCTTCTACGCAGAAGGGAGCAGAGGCGGCAGTCAAGCCTCTTCTCGTTCCTC Ampl CACATTGGCACCCGCAATCCTTCTAACAATGCTGCAATCGTGCTACAACTTCCTCAAGGAACAACATTGCCAAAAGGCTTCTACGCAGAAGGGAGCAGAGGCGGCAGTCAAGCCTCTTCTCGTTCCTC Diff .....................X..........................................................................................................
China-CDC-N
Ref GGGGAACTTCTCCTGCTAGAATGGCTGGCAATGGCGGTGATGCTGCTCTTGCTTTGCTGCTGCTTGACAGATTGAACCAGCTTGAGAGCAAAATGTCTG Ampl GGGGAACTTCTCCTGCTAGAATGGCTGGCAATGGCGGTGATGCTGCTCTTGTTTTGCTGCTGCTTGACAGATTGAACCAGCTTGAGAGCAAAATGTCTG Diff ...................................................X...............................................
2019-nCoV_N1
Perfectly matching
Yes
2019-nCoV_N2
Perfectly matching
Yes
2019-nCoV_N3
Perfectly matching
Yes
E_Sarbeco
Perfectly matching
Yes
RdRP_SARSr
Perfectly matching
Yes
WH-NIC_N
Perfectly matching
Yes
NIID_2019_nCOV_N
Perfectly matching
Yes
JRC-S
Perfectly matching
Yes
China-CDC-ORF1ab
Perfectly matching
Yes
RdRp gene/nCoV_IP2
Perfectly matching
Yes
RdRp gene/nCoV_IP4
Perfectly matching
Yes
HKU-ORF1b-nsp14
Perfectly matching
Yes
HKU-N
Perfectly matching
Yes
The database contains amplicons collected by screening viral shared genomic sequences of SARS-CoV-2 by in silico determination of PCR-based molecular assays to diagnose COVID-19. The information is retrieved periodically. Acknowledgements
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