enabled by data from
Amplicon collected by in silico screening of USA/TX-HMH-MCoV-19843/2020 viralgenome, collected on 08/01/2021
Strain
USA/TX-HMH-MCoV-19843/2020
Accession ID
Genome sequenced at
Texas, USA, North America
Exposure at
Texas, USA, North America
China-CDC-ORF1ab
Ref CCCTGTGGGTTTTACACTTAAAAACACAGTCTGTACCGTCTGCGGTATGTGGAAAGGTTATGGCTGTAGTTGTGATCAACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGT Ampl CCCTGTGGGTTTTACACTTAAAAACACAGTCTGTACCGTCTGCGGTATGTGGAAAGGTTATGGCTGTAATTGTGATCAACTCCGCGAACCCATGCTTCAGTCAGCTGATGCACAATCGT Diff ....................................................................X..................................................
China-CDC-N
Ref GGGGAACTTCTCCTGCTAGAATGGCTGGCAATGGCGGTGATGCTGCTCTTGCTTTGCTGCTGCTTGACAGATTGAACCAGCTTGAGAGCAAAATGTCTG Ampl GGGGAACTTCTCCTGCTAGAATGGCTGGCAATGGCGGTGACGCTGCTCTTGCTTTGCTGCTGCTTGACAGATTGAACCAGCTTGAGAGCAAAATGTCTG Diff ........................................X..........................................................
2019-nCoV_N1
Perfectly matching
Yes
2019-nCoV_N2
Perfectly matching
Yes
2019-nCoV_N3
Perfectly matching
Yes
E_Sarbeco
Perfectly matching
Yes
RdRP_SARSr
Perfectly matching
Yes
WH-NIC_N
Perfectly matching
Yes
NIID_2019_nCOV_N
Perfectly matching
Yes
JRC-S
Perfectly matching
Yes
N_Sarbeco
Perfectly matching
Yes
RdRp gene/nCoV_IP2
Perfectly matching
Yes
RdRp gene/nCoV_IP4
Perfectly matching
Yes
HKU-ORF1b-nsp14
Perfectly matching
Yes
HKU-N
Perfectly matching
Yes
The database contains amplicons collected by screening viral shared genomic sequences of SARS-CoV-2 by in silico determination of PCR-based molecular assays to diagnose COVID-19. The information is retrieved periodically. Acknowledgements
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