enabled by data from
Amplicon collected by in silico screening of Australia/VIC10102/2020 viralgenome, collected on 30/09/2020
Strain
Australia/VIC10102/2020
Accession ID
Genome sequenced at
Victoria, Australia, Oceania
Exposure at
Victoria, Australia, Oceania
RdRP_SARSr
Ref GTGAAATGGTCATGTGTGGCGGTTCACTATATGTTAAACCAGGTGGAACCTCATCAGGAGATGCCACAACTGCTTATGCTAATAGTGTTTTTAACATTTG Ampl GTGAAATGGTCATGTGTGGCGGTTCACTATATGTTAAACCAGGTGGAACCTYATCAGGAGATGCCACAACTGCTTATGCTAATAGTGTTTTTAACATTTG Diff ...................................................X................................................
JRC-S
Ref GACATACCCATTGGTGCAGGTATATGCGCTAGTTATCAGACTCAGACTAATTCTCCTCGGCGGGCACGTAGTGTAGCTAGTCA Ampl GACATACCCATTGGTGCAGGTATATGCKCTAGTTAYYAGACTCAGACTAATTCTCCTYGGCGGGCACGTAGTGTAGCTAGTCA Diff ...........................X.......XX....................X.........................
RdRp gene/nCoV_IP4
Ref GGTAACTGGTATGATTTCGGTGATTTCATACAAACCACGCCAGGTAGTGGAGTTCCTGTTGTAGATTCTTATTATTCATTGTTAATGCCTATATTAACCTTGACCAG Ampl GGTAACTGGTATGATTTCGGTGATTTCATACAAACCACGCCAGGTAKTGGAGTTCCTGTTGTAGATTCTTATTATTCATTGTTAATGCCTATATTAACCTTGACCAG Diff ..............................................X............................................................
2019-nCoV_N1
Perfectly matching
Yes
2019-nCoV_N2
Perfectly matching
Yes
2019-nCoV_N3
Perfectly matching
Yes
E_Sarbeco
Perfectly matching
Yes
WH-NIC_N
Perfectly matching
Yes
NIID_2019_nCOV_N
Perfectly matching
Yes
N_Sarbeco
Perfectly matching
Yes
China-CDC-ORF1ab
Perfectly matching
Yes
China-CDC-N
Perfectly matching
Yes
RdRp gene/nCoV_IP2
Perfectly matching
Yes
HKU-ORF1b-nsp14
Perfectly matching
Yes
HKU-N
Perfectly matching
Yes
The database contains amplicons collected by screening viral shared genomic sequences of SARS-CoV-2 by in silico determination of PCR-based molecular assays to diagnose COVID-19. The information is retrieved periodically. Acknowledgements
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