enabled by data from
Amplicon collected by in silico screening of Algeria/G0638_2264/2020 viralgenome, collected on 29/03/2020
Strain
Algeria/G0638_2264/2020
Accession ID
Genome sequenced at
Boufarik, Algeria, Africa
Exposure at
Boufarik, Algeria, Africa
2019-nCoV_N1
Perfectly matching
Yes
2019-nCoV_N2
Perfectly matching
Yes
2019-nCoV_N3
Perfectly matching
Yes
E_Sarbeco
Perfectly matching
Yes
RdRP_SARSr
Perfectly matching
Yes
WH-NIC_N
Perfectly matching
Yes
NIID_2019_nCOV_N
Perfectly matching
Yes
JRC-S
Perfectly matching
Yes
N_Sarbeco
Perfectly matching
Yes
China-CDC-ORF1ab
Perfectly matching
Yes
China-CDC-N
Perfectly matching
Yes
RdRp gene/nCoV_IP2
Perfectly matching
Yes
RdRp gene/nCoV_IP4
Perfectly matching
Yes
HKU-ORF1b-nsp14
Perfectly matching
Yes
HKU-N
Perfectly matching
Yes
Diagnostic_Kit_for_SARS-CoV-2_Nucleic Acid(RT-PCR)_ORF1ab
Perfectly matching
Yes
Diagnostic_Kit_for_SARS-CoV-2_Nucleic AcidRT-PCR)_N
Perfectly matching
Yes
OmMet
Perfectly matching
Yes
The database contains amplicons collected by screening viral shared genomic sequences of SARS-CoV-2 by in silico determination of PCR-based molecular assays to diagnose COVID-19. The information is retrieved periodically. Acknowledgements
GISAID data provided on this website are subject to GISAID's Terms and Conditions