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COVID-19 In Vitro Diagnostic Devices and Test Methods Database

SARS-CoV-2 target regions

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EPI_ISL ID Virus name Region Country Collection Date Navigate
EPI_ISL ID: EPI_ISL_17276503 Virus name: hCoV-19/Belgium/Jessa_11-2312-000763LKO/2023 Region: Europe Country: Belgium Collection Date: 2023-03-20 Go to details
EPI_ISL ID: EPI_ISL_17276500 Virus name: hCoV-19/Belgium/Jessa_11-2312-000762LKO/2023 Region: Europe Country: Belgium Collection Date: 2023-03-20 Go to details
EPI_ISL ID: EPI_ISL_17276499 Virus name: hCoV-19/Belgium/Jessa_11-2312-000761LKO/2023 Region: Europe Country: Belgium Collection Date: 2023-03-20 Go to details
EPI_ISL ID: EPI_ISL_17276036 Virus name: hCoV-19/Italy/LOM_80197594GAD/2023 Region: Europe Country: Italy Collection Date: 2023-03-20 Go to details
EPI_ISL ID: EPI_ISL_17276035 Virus name: hCoV-19/Italy/LOM_80197685AGH/2023 Region: Europe Country: Italy Collection Date: 2023-03-20 Go to details
EPI_ISL ID: EPI_ISL_17276032 Virus name: hCoV-19/Italy/LOM_80197902CAS/2023 Region: Europe Country: Italy Collection Date: 2023-03-20 Go to details
EPI_ISL ID: EPI_ISL_17273451 Virus name: hCoV-19/Australia/NSW-RPAH-3726/2023 Region: Oceania Country: Australia Collection Date: 2023-03-20 Go to details
EPI_ISL ID: EPI_ISL_17273448 Virus name: hCoV-19/Australia/NSW-RPAH-3721/2023 Region: Oceania Country: Australia Collection Date: 2023-03-20 Go to details
EPI_ISL ID: EPI_ISL_17261502 Virus name: hCoV-19/Australia/NSW-RPAH-3717/2023 Region: Oceania Country: Australia Collection Date: 2023-03-20 Go to details
EPI_ISL ID: EPI_ISL_17273449 Virus name: hCoV-19/Australia/NSW-RPAH-3723/2023 Region: Oceania Country: Australia Collection Date: 2023-03-20 Go to details
EPI_ISL ID: EPI_ISL_17276523 Virus name: hCoV-19/Belgium/Jessa_11-2311-006516/2023 Region: Europe Country: Belgium Collection Date: 2023-03-19 Go to details
EPI_ISL ID: EPI_ISL_17276525 Virus name: hCoV-19/Belgium/Jessa_11-2311-006531/2023 Region: Europe Country: Belgium Collection Date: 2023-03-19 Go to details
EPI_ISL ID: EPI_ISL_17276524 Virus name: hCoV-19/Belgium/Jessa_11-2311-006553/2023 Region: Europe Country: Belgium Collection Date: 2023-03-19 Go to details
EPI_ISL ID: EPI_ISL_17276507 Virus name: hCoV-19/Belgium/Jessa_11-2311-006646ZOL/2023 Region: Europe Country: Belgium Collection Date: 2023-03-19 Go to details
EPI_ISL ID: EPI_ISL_17276037 Virus name: hCoV-19/Italy/LOM_80197326BAL/2023 Region: Europe Country: Italy Collection Date: 2023-03-19 Go to details
EPI_ISL ID: EPI_ISL_17273447 Virus name: hCoV-19/Australia/NSW-RPAH-3720/2023 Region: Oceania Country: Australia Collection Date: 2023-03-19 Go to details
EPI_ISL ID: EPI_ISL_17269041 Virus name: hCoV-19/Denmark/DCGC-643856/2023 Region: Europe Country: Denmark Collection Date: 2023-03-18 Go to details
EPI_ISL ID: EPI_ISL_17276519 Virus name: hCoV-19/Belgium/Jessa_11-2311-005927/2023 Region: Europe Country: Belgium Collection Date: 2023-03-18 Go to details
EPI_ISL ID: EPI_ISL_17269348 Virus name: hCoV-19/Denmark/DCGC-644115/2023 Region: Europe Country: Denmark Collection Date: 2023-03-18 Go to details
EPI_ISL ID: EPI_ISL_17269284 Virus name: hCoV-19/Denmark/DCGC-644051/2023 Region: Europe Country: Denmark Collection Date: 2023-03-18 Go to details
EPI_ISL ID: EPI_ISL_17269282 Virus name: hCoV-19/Denmark/DCGC-644049/2023 Region: Europe Country: Denmark Collection Date: 2023-03-18 Go to details
EPI_ISL ID: EPI_ISL_17269248 Virus name: hCoV-19/Denmark/DCGC-644015/2023 Region: Europe Country: Denmark Collection Date: 2023-03-18 Go to details
EPI_ISL ID: EPI_ISL_17269089 Virus name: hCoV-19/Denmark/DCGC-643904/2023 Region: Europe Country: Denmark Collection Date: 2023-03-18 Go to details
EPI_ISL ID: EPI_ISL_17269053 Virus name: hCoV-19/Denmark/DCGC-643868/2023 Region: Europe Country: Denmark Collection Date: 2023-03-18 Go to details
EPI_ISL ID: EPI_ISL_17269036 Virus name: hCoV-19/Denmark/DCGC-643851/2023 Region: Europe Country: Denmark Collection Date: 2023-03-18 Go to details

Pre-calculated values are obtained by using ThermonucleotideBLAST (Gans JD, Wolinsky M. 2008), which performs in silico simulations with the NAAT methods stored in our database on the selected high-quality (<1% Ns and <0.05% unique amino acid mutations) and full length (>29,000bp) viral genomes made available by GISAID. The aims are both to detect potential target regions of the NAAT methods and to highlight possible differences with the expected reference sequence which might affect the NAAT performance.

The database contains amplicons collected by screening viral shared genomic sequences of SARSCoV- 2 by in silico determination of PCR-based molecular assays to diagnose COVID-19. The information is retrieved periodically. Acknowledgements

GISAID data provided on this website are subject to GISAID's Terms and Conditions