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COVID-19 In Vitro Diagnostic Devices and Test Methods Database

SARS-CoV-2 target regions

enabled by data from GSAID Logo

EPI_ISL ID Virus name Region Country Collection Date Navigate
EPI_ISL ID: EPI_ISL_17276303 Virus name: hCoV-19/Sweden/14_SE300_DC-004034/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276302 Virus name: hCoV-19/Sweden/14_SE300_DC-004026/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276300 Virus name: hCoV-19/Sweden/14_SE300_DC-003961/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276298 Virus name: hCoV-19/Sweden/14_SE300_DC-003923/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276295 Virus name: hCoV-19/Sweden/14_SE300_DC-003997/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276294 Virus name: hCoV-19/Sweden/14_SE300_DC-004061/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276293 Virus name: hCoV-19/Sweden/14_SE300_DC-004033/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276292 Virus name: hCoV-19/Sweden/14_SE300_DC-003993/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276289 Virus name: hCoV-19/Sweden/14_SE300_DC-003960/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276288 Virus name: hCoV-19/Sweden/14_SE300_DC-003922/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17273450 Virus name: hCoV-19/Australia/NSW-RPAH-3725/2023 Region: Oceania Country: Australia Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276501 Virus name: hCoV-19/Belgium/Jessa_11-2312-000766LKO/2023 Region: Europe Country: Belgium Collection Date: 2023-03-20 Go to details
EPI_ISL ID: EPI_ISL_17264589 Virus name: hCoV-19/Germany/NW-RKI-I-1124338/2023 Region: Europe Country: Germany Collection Date: 2023-03-20 Go to details
EPI_ISL ID: EPI_ISL_17276033 Virus name: hCoV-19/Italy/LOM_80197894LIP/2023 Region: Europe Country: Italy Collection Date: 2023-03-20 Go to details
EPI_ISL ID: EPI_ISL_17276513 Virus name: hCoV-19/Belgium/Jessa_11-2312-001128ZOL/2023 Region: Europe Country: Belgium Collection Date: 2023-03-20 Go to details
EPI_ISL ID: EPI_ISL_17276511 Virus name: hCoV-19/Belgium/Jessa_11-2312-001125ZOL/2023 Region: Europe Country: Belgium Collection Date: 2023-03-20 Go to details
EPI_ISL ID: EPI_ISL_17276509 Virus name: hCoV-19/Belgium/Jessa_11-2312-001081ZOL/2023 Region: Europe Country: Belgium Collection Date: 2023-03-20 Go to details
EPI_ISL ID: EPI_ISL_17276504 Virus name: hCoV-19/Belgium/Jessa_11-2312-001051ZOL/2023 Region: Europe Country: Belgium Collection Date: 2023-03-20 Go to details
EPI_ISL ID: EPI_ISL_17276502 Virus name: hCoV-19/Belgium/Jessa_11-2312-000764LKO/2023 Region: Europe Country: Belgium Collection Date: 2023-03-20 Go to details
EPI_ISL ID: EPI_ISL_17276034 Virus name: hCoV-19/Italy/LOM_80197782ILL/2023 Region: Europe Country: Italy Collection Date: 2023-03-20 Go to details
EPI_ISL ID: EPI_ISL_17276512 Virus name: hCoV-19/Belgium/Jessa_11-2312-001126ZOL/2023 Region: Europe Country: Belgium Collection Date: 2023-03-20 Go to details
EPI_ISL ID: EPI_ISL_17276510 Virus name: hCoV-19/Belgium/Jessa_11-2312-001117ZOL/2023 Region: Europe Country: Belgium Collection Date: 2023-03-20 Go to details
EPI_ISL ID: EPI_ISL_17276508 Virus name: hCoV-19/Belgium/Jessa_11-2312-001079ZOL/2023 Region: Europe Country: Belgium Collection Date: 2023-03-20 Go to details
EPI_ISL ID: EPI_ISL_17276506 Virus name: hCoV-19/Belgium/Jessa_11-2312-001058ZOL/2023 Region: Europe Country: Belgium Collection Date: 2023-03-20 Go to details
EPI_ISL ID: EPI_ISL_17276505 Virus name: hCoV-19/Belgium/Jessa_11-2312-001057ZOL/2023 Region: Europe Country: Belgium Collection Date: 2023-03-20 Go to details

Pre-calculated values are obtained by using ThermonucleotideBLAST (Gans JD, Wolinsky M. 2008), which performs in silico simulations with the NAAT methods stored in our database on the selected high-quality (<1% Ns and <0.05% unique amino acid mutations) and full length (>29,000bp) viral genomes made available by GISAID. The aims are both to detect potential target regions of the NAAT methods and to highlight possible differences with the expected reference sequence which might affect the NAAT performance.

The database contains amplicons collected by screening viral shared genomic sequences of SARSCoV- 2 by in silico determination of PCR-based molecular assays to diagnose COVID-19. The information is retrieved periodically. Acknowledgements

GISAID data provided on this website are subject to GISAID's Terms and Conditions