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COVID-19 In Vitro Diagnostic Devices and Test Methods Database

SARS-CoV-2 target regions

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EPI_ISL ID Virus name Region Country Collection Date Navigate
EPI_ISL ID: EPI_ISL_17276413 Virus name: hCoV-19/Sweden/14_SE300_DC-004089/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276412 Virus name: hCoV-19/Sweden/14_SE300_DC-004135/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276399 Virus name: hCoV-19/Sweden/14_SE300_DC-004119/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276392 Virus name: hCoV-19/Sweden/14_SE300_DC-004118/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276379 Virus name: hCoV-19/Sweden/14_SE300_DC-004107/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276361 Virus name: hCoV-19/Sweden/14_SE300_DC-004031/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276355 Virus name: hCoV-19/Sweden/14_SE300_DE-003207/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276354 Virus name: hCoV-19/Sweden/14_SE300_DE-003250/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276344 Virus name: hCoV-19/Sweden/14_SE300_DE-003182/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276335 Virus name: hCoV-19/Sweden/14_SE300_DC-003964/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276334 Virus name: hCoV-19/Sweden/14_SE300_DC-003946/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276328 Virus name: hCoV-19/Sweden/14_SE300_DC-004064/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276309 Virus name: hCoV-19/Sweden/14_SE300_DC-003924/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276299 Virus name: hCoV-19/Sweden/14_SE300_DC-003943/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276333 Virus name: hCoV-19/Sweden/14_SE300_DC-003926/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276400 Virus name: hCoV-19/Sweden/14_SE300_DC-004127/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276390 Virus name: hCoV-19/Sweden/14_SE300_DC-004085/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276387 Virus name: hCoV-19/Sweden/14_SE300_DC-004125/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276386 Virus name: hCoV-19/Sweden/14_SE300_DC-004117/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276375 Virus name: hCoV-19/Sweden/14_SE300_DC-004009/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276374 Virus name: hCoV-19/Sweden/14_SE300_DC-003966/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276370 Virus name: hCoV-19/Sweden/14_SE300_DC-003979/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276369 Virus name: hCoV-19/Sweden/14_SE300_DC-003971/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276364 Virus name: hCoV-19/Sweden/14_SE300_DC-004008/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details
EPI_ISL ID: EPI_ISL_17276362 Virus name: hCoV-19/Sweden/14_SE300_DC-004058/2023 Region: Europe Country: Sweden Collection Date: 2023-03-21 Go to details

Pre-calculated values are obtained by using ThermonucleotideBLAST (Gans JD, Wolinsky M. 2008), which performs in silico simulations with the NAAT methods stored in our database on the selected high-quality (<1% Ns and <0.05% unique amino acid mutations) and full length (>29,000bp) viral genomes made available by GISAID. The aims are both to detect potential target regions of the NAAT methods and to highlight possible differences with the expected reference sequence which might affect the NAAT performance.

The database contains amplicons collected by screening viral shared genomic sequences of SARSCoV- 2 by in silico determination of PCR-based molecular assays to diagnose COVID-19. The information is retrieved periodically. Acknowledgements

GISAID data provided on this website are subject to GISAID's Terms and Conditions